Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1859951 chr19:2142633 C/G 0.000113 487 32.9 31.83 31.43 KM Plot
THCA rs1859954 chr19:2145481 G/T 2.67E-5 503 31.23 31.7 31.9 KM Plot
THCA rs1871041 chr11:67351540 A/G 4.9E-6 496 31.3 28.83 31.77 KM Plot
THCA rs187255938 chr3:53959916 G/A 1.31E-8 498 31.47 31.02 17.8 KM Plot
THCA rs187984232 chr20:61492362 C/A 5.91E-5 493 31 33.78 37.48 KM Plot
THCA rs1886767 chr1:19285944 T/G 0 496 5.8 33.83 31.53 KM Plot
THCA rs1891031 chr1:119980195 A/T 2.87E-5 502 32.07 27.1 50 KM Plot
THCA rs189320510 chr1:152920953 T/C 0.000147 499 31.42 34.43 37.7 KM Plot
THCA rs1894751 chr7:43996869 G/T 2.23E-8 503 31.15 33.5 32.37 KM Plot
THCA rs191833148 chr3:97199643 T/A 7.99E-5 499 31.5 30.03 37.77 KM Plot
THCA rs192911834 chr7:32793835 T/C 9.58E-5 502 31.45 31.57 31.97 KM Plot
THCA rs1934447 chr10:90406451 C/T 2.73E-5 498 32.9 31.3 27.02 KM Plot
THCA rs1950910 chr14:52029002 G/A 9.83E-5 498 31.53 31.52 25.47 KM Plot
THCA rs1964488 chr7:32799937 T/G 9.65E-5 500 31.45 31.67 32.1 KM Plot
THCA rs1965139 chr15:41536352 C/T 0.00011 495 31.6 31.62 33.27 KM Plot